pileup2seq.py
===============

This folder contains a "pileup2seq.py" script. It can be used to convert samtools pileup output to LASER required input format (.seq file).

Data
----

Under the "exampleBAM" folder, you can find "NA12878.chrom22.recal.bam", which is a BAM file of the HapMap sample NA12878.
This sample was target sequenced but there is no target region on chromosome 22.

Example
-------

See the "cmd.sh" file for command line examples.

Note
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This python script is contributed by Xiaowei Zhan. 
If you have any questions, please email Xiaowei at zhanxw@umich.edu.

